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Bootstrap analysis question.

I have a 20,000 box Heuristic analysis that results in a single tree of 1961 

Can a bootstrap analysis be performed on it using PAUP? 

And if so, what are the steps?

I have heard that giant matrices, like this one, would take weeks to months to 
do the standard bootstrap offered by PAUP. Having tried it once and after not 
seeing the progress bar even appear after a few hours, I arrived at a similar 

David Peters
St. Louis